species:   Cocin
pid:       PID1267
parent:    cci-milR-14
paralog:   
locus:     scaffold_104:30952-31038
matures:   ['UGGAGAUGGUAGCAACCGGA', 'CUCUUGCUGCUUCUUCGCC']
srr:       SRR9972087
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972087.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972087.cram scaffold_104:30952-31038

2 out of bounds
9 alignments
2 proper strand
1 stranded perfect matches

***********************                                         ***********************
UUGGAGAUGGUAGCAACCGGAGUAGUUGGCGUGAAGCUGCUGGCGGAGCGGCUGCGCGCUUCUUCCUCCUCUUGCUGCUUCUUCGCC
.((((((.((((((((..((((.((..((((((.(((((((.....))))))).)))))).))..))))..))))))))))))))..
-UGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=20 a=0 c
--------------------------------------------------------------------CUCUUGCUGCUUCUUCGCC l=19 a=0 c*
-UGGAGAUGGUAGCAACCGGAGU---------------------------------------------------------------- l=22 a=1 ma
------------------------------------------------------------------UCCUCUUGCUGCUUCUUCGCC l=21 a=0 ma*

-UGGAGAUGGUAGCAACCGGAGU---------------------------------------------------------------- l=22 a=1 (ma)
--aGAGAUGGUAGCAACCGGAGU---------------------------------------------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-100110011100
fn-001
